Computer Codes for the Biophysical Journal Publication

The computer programs below are for BJ, vol. 110, pp. 733-742, 2016. The programs run with the XPPAUT computer software. XPPAUT is free, and runs on Unix, Linux, and Windows machines. It can be downloaded from the website of Bard Ermentrout .

• The original Dual Oscillator Model (DOM)
  This was used to make Figure 2. Fig2.ode


• The modified DOM with Ca-dependent PDH
  This was used in Figure 3. Fig3.ode


• The modified DOM with Ca-dependent PDH
  This was used in Figure 5A, left panel. Fig5A_left.ode


• The modified DOM with Ca-dependent PDH
  This was used in Figure 5A, right panel. Fig5A_right.ode


• The modified DOM with Ca-dependent PDH
  This was used for the diazoxide simulation in Figure 6. Fig6.ode


• The modified DOM with Ca-dependent PDH
  This was used for the PFK_M knockout simulation in Figure 7A. Fig7A.ode


• The modified DOM with Ca-dependent PDH
  This was used for the KIC simulation in Figure 7B. Fig7B.ode